Variant report

Variant	rs13036930
Chromosome Location	chr20:52711695-52711696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52709593..52716717-chr20:52810616..52817994,186	MCF-7	breast:
2	chr20:52711659..52714007-chr20:55852202..55854172,2	MCF-7	breast:
3	chr17:56706304..56710637-chr20:52708902..52722942,22	MCF-7	breast:
4	chr20:41011412..41013097-chr20:52711162..52713501,2	MCF-7	breast:
5	chr20:46410730..46421216-chr20:52711028..52724253,28	MCF-7	breast:
6	chr20:52711537..52718198-chr20:52810789..52818597,362	MCF-7	breast:
7	chr17:56735171..56737953-chr20:52710895..52716530,6	MCF-7	breast:
8	chr20:52711135..52713931-chr20:52823436..52825930,2	K562	blood:
9	chr20:52209026..52210736-chr20:52711220..52713245,2	MCF-7	breast:
10	chr17:56734263..56738304-chr20:52709856..52719047,15	MCF-7	breast:
11	chr17:56703018..56712407-chr20:52697460..52725685,93	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000171940	Chromatin interaction
ENSG00000196562	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000101132	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12479663	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35601413	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35938831	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52710800-52713200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr20:52710800-52713400	Weak transcription	HMEC	breast
3	chr20:52711000-52712400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:52711000-52713000	Weak transcription	A549	lung
5	chr20:52711000-52713600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr20:52711600-52712400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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