Variant report

Variant	rs13042527
Chromosome Location	chr20:52849246-52849247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13039589	0.97[EUR][1000 genomes]
rs13039601	0.97[EUR][1000 genomes]
rs13045276	0.83[EUR][1000 genomes]
rs13045683	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477725	0.95[EUR][1000 genomes]
rs1964861	0.87[EUR][1000 genomes]
rs2023531	0.83[EUR][1000 genomes]
rs28404865	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28435070	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526259	0.87[EUR][1000 genomes]
rs28676447	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28707344	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28795767	0.82[EUR][1000 genomes]
rs292129	0.81[EUR][1000 genomes]
rs6013946	0.84[EUR][1000 genomes]
rs6023080	0.84[EUR][1000 genomes]
rs6023083	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52841000-52851000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:52849000-52849400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:52849000-52849400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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