Variant report

Variant	rs13049202
Chromosome Location	chr21:28409049-28409050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11701774	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2758532	chr21:28380230-28540443	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	esv2758817	chr21:28380230-28540443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv587341	chr21:28391743-28419053	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28351800-28416600	Weak transcription	Ovary	ovary
2	chr21:28407000-28409800	Weak transcription	Psoas Muscle	Psoas
3	chr21:28407600-28409600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr21:28408000-28409400	Enhancers	Fetal Brain Female	brain
5	chr21:28408200-28409200	Weak transcription	Fetal Brain Male	brain
6	chr21:28408200-28409400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr21:28408600-28409200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr21:28408800-28409200	Enhancers	Rectal Smooth Muscle	rectum
9	chr21:28408800-28409400	Enhancers	Colon Smooth Muscle	Colon
10	chr21:28409000-28409400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr21:28409000-28409400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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