Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10854377	0.82[ASN][1000 genomes]
rs12483065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1474513	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1474514	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16981425	0.91[AFR][1000 genomes]
rs2142237	0.90[ASN][1000 genomes]
rs2823207	0.81[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2823209	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2823211	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2823214	0.90[ASN][1000 genomes]
rs2823215	0.90[ASN][1000 genomes]
rs2823216	0.89[ASN][1000 genomes]
rs2823217	0.90[ASN][1000 genomes]
rs2823219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2823221	0.90[ASN][1000 genomes]
rs2823224	0.82[ASN][1000 genomes]
rs2823225	0.82[ASN][1000 genomes]
rs2823226	0.82[ASN][1000 genomes]
rs2823227	0.82[ASN][1000 genomes]
rs2823228	0.82[ASN][1000 genomes]
rs2823229	0.80[ASN][1000 genomes]
rs2823230	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7279678	0.85[EUR][1000 genomes]
rs926133	0.88[ASN][1000 genomes]
rs982774	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs982775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1056659	chr21:16646531-16709391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16663200-16674400	Weak transcription	Psoas Muscle	Psoas
2	chr21:16663400-16676400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr21:16671600-16674400	Enhancers	NHEK	skin
4	chr21:16672600-16674400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr21:16673200-16674400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr21:16673200-16674600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr21:16673800-16675400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr21:16674000-16675400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr21:16674000-16680800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr21:16674200-16674400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr21:16674200-16674400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr21:16674200-16674600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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