Variant report
| Variant | rs13050154 |
|---|---|
| Chromosome Location | chr21:28026815-28026816 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11088005 | 0.83[AMR][1000 genomes] |
| rs1505943 | 0.83[AMR][1000 genomes] |
| rs1847862 | 0.83[AMR][1000 genomes] |
| rs2135306 | 0.83[AMR][1000 genomes] |
| rs2174535 | 0.80[AMR][1000 genomes] |
| rs2174536 | 0.80[AMR][1000 genomes] |
| rs2830321 | 0.83[AMR][1000 genomes] |
| rs2830322 | 0.82[AMR][1000 genomes] |
| rs2830323 | 0.83[AMR][1000 genomes] |
| rs2830324 | 0.82[AMR][1000 genomes] |
| rs2830326 | 0.82[AMR][1000 genomes] |
| rs2830327 | 0.83[AMR][1000 genomes] |
| rs2830329 | 0.83[AMR][1000 genomes] |
| rs2830347 | 0.83[AMR][1000 genomes] |
| rs2830348 | 0.82[AMR][1000 genomes] |
| rs3958885 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4817130 | 0.83[AMR][1000 genomes] |
| rs55689069 | 0.85[AMR][1000 genomes] |
| rs55707773 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs55708819 | 0.83[AMR][1000 genomes] |
| rs56250727 | 0.85[AMR][1000 genomes] |
| rs6516742 | 0.85[AMR][1000 genomes] |
| rs6516743 | 0.85[AMR][1000 genomes] |
| rs6516744 | 0.85[AMR][1000 genomes] |
| rs756166 | 0.83[AMR][1000 genomes] |
| rs996632 | 0.83[AMR][1000 genomes] |
| rs996633 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056506 | chr21:27332898-28049880 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv544412 | chr21:27332898-28049880 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv544413 | chr21:27942060-28065995 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:28024600-28031600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
