Variant report

Variant	rs13050849
Chromosome Location	chr21:15486578-15486579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1136522	0.92[AFR][1000 genomes]
rs11911786	0.81[ASN][1000 genomes]
rs12627207	0.81[ASN][1000 genomes]
rs12627315	0.95[AFR][1000 genomes]
rs13048561	0.95[AFR][1000 genomes]
rs13050604	0.91[AFR][1000 genomes]
rs13050925	0.94[AFR][1000 genomes]
rs1556274	0.89[AFR][1000 genomes]
rs1556275	0.89[AFR][1000 genomes]
rs1556277	0.95[AFR][1000 genomes]
rs2032283	0.82[ASN][1000 genomes]
rs2187062	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403729	0.82[ASN][1000 genomes]
rs4539869	0.89[AFR][1000 genomes]
rs4541312	0.91[AFR][1000 genomes]
rs4594525	0.91[AFR][1000 genomes]
rs59313234	0.90[ASN][1000 genomes]
rs62208630	0.88[ASN][1000 genomes]
rs62208636	0.88[ASN][1000 genomes]
rs62208642	0.82[ASN][1000 genomes]
rs7276296	0.81[ASN][1000 genomes]
rs7276946	0.81[ASN][1000 genomes]
rs7278737	0.92[AFR][1000 genomes]
rs7279700	0.92[AFR][1000 genomes]
rs8133393	0.90[AFR][1000 genomes]
rs8133532	0.90[AFR][1000 genomes]
rs9982308	0.95[AFR][1000 genomes]
rs9983541	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1067433	chr21:14736298-15507502	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1055396	chr21:14756514-15507502	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1062639	chr21:14775729-15507502	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1058072	chr21:15372509-15568171	Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1056787	chr21:15407504-15530291	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1827667	chr21:15442582-15521121	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1065433	chr21:15484229-15528702	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15457600-15487400	Weak transcription	Fetal Brain Male	brain
2	chr21:15470400-15487200	Weak transcription	Ovary	ovary
3	chr21:15474000-15489200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr21:15474600-15489600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr21:15475000-15486600	Weak transcription	Fetal Stomach	stomach
6	chr21:15475800-15494600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr21:15477600-15498000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr21:15478000-15495200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:15480400-15497200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr21:15485000-15488600	Strong transcription	Dnd41	blood
11	chr21:15485800-15486600	Weak transcription	GM12878-XiMat	blood
12	chr21:15486000-15494000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr21:15486200-15487200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr21:15486200-15496600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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