Variant report

Variant	rs13051158
Chromosome Location	chr21:40743091-40743092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11910437	1.00[ASN][1000 genomes]
rs11910622	0.89[ASN][1000 genomes]
rs13045993	1.00[ASN][1000 genomes]
rs13050927	1.00[ASN][1000 genomes]
rs34613278	1.00[ASN][1000 genomes]
rs35785797	1.00[ASN][1000 genomes]
rs4295088	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913744	chr21:40670167-40757973	Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv1059420	chr21:40684295-40745952	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv1059868	chr21:40711535-41043291	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1056452	chr21:40741893-40782587	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40741200-40743600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:40742400-40743200	Flanking Active TSS	K562	blood
3	chr21:40742800-40743200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:40742800-40744000	Weak transcription	Liver	Liver
5	chr21:40742800-40745400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr21:40743000-40743200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:40743000-40743400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr21:40743000-40743600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr21:40743000-40743600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr21:40743000-40745400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr21:40743000-40745400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr21:40743000-40745800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr21:40743000-40745800	Weak transcription	HepG2	liver
14	chr21:40743000-40751600	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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