Variant report

Variant	rs13051885
Chromosome Location	chr21:46044625-46044626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10854463	0.90[JPT][hapmap]
rs12106369	0.86[JPT][hapmap]
rs12482870	0.85[JPT][hapmap]
rs12626853	0.86[JPT][hapmap]
rs13048478	0.90[JPT][hapmap]
rs1883039	0.86[JPT][hapmap]
rs1883041	0.86[JPT][hapmap]
rs2073437	0.86[JPT][hapmap]
rs2225433	0.91[JPT][hapmap]
rs2256361	0.90[JPT][hapmap]
rs2256490	0.90[JPT][hapmap]
rs2256496	0.90[JPT][hapmap]
rs2329845	0.86[JPT][hapmap]
rs2838610	0.86[JPT][hapmap]
rs2838611	0.81[JPT][hapmap]
rs2838612	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2838614	0.86[JPT][hapmap]
rs2838617	0.86[JPT][hapmap]
rs2838618	0.86[JPT][hapmap]
rs2838619	0.91[JPT][hapmap]
rs2838622	0.86[JPT][hapmap]
rs2838623	0.86[JPT][hapmap]
rs2838624	0.86[JPT][hapmap]
rs2838625	0.86[JPT][hapmap]
rs2838627	0.90[JPT][hapmap]
rs28542851	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4050979	0.90[JPT][hapmap]
rs4818728	0.81[JPT][hapmap]
rs4818947	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4818950	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4818953	0.86[JPT][hapmap]
rs7275203	0.86[JPT][hapmap]
rs7275666	0.86[JPT][hapmap]
rs7276421	0.86[JPT][hapmap]
rs7276859	0.86[JPT][hapmap]
rs7280471	0.81[JPT][hapmap]
rs7509675	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs762431	0.86[JPT][hapmap]
rs8126811	0.86[JPT][hapmap]
rs8129802	0.91[JPT][hapmap]
rs9284507	0.91[JPT][hapmap]
rs9306112	0.86[JPT][hapmap]
rs9983892	0.86[JPT][hapmap]
rs9984726	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065798	chr21:45941000-46097463	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv869108	chr21:45941000-46097463	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv544476	chr21:45941000-46097463	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv913950	chr21:45985068-46097463	Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46018400-46048400	Weak transcription	Right Atrium	heart
2	chr21:46044600-46044800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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