Variant report

Variant	rs13053879
Chromosome Location	chr22:29259102-29259103
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1222	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs13056243	0.86[CEU][hapmap]
rs13056546	0.81[EUR][1000 genomes]
rs13058031	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16986825	0.86[CEU][hapmap]
rs16986838	0.80[CEU][hapmap];0.83[AFR][1000 genomes]
rs16986861	0.80[CEU][hapmap]
rs16986864	0.86[CEU][hapmap]
rs16987024	0.87[EUR][1000 genomes]
rs16987027	0.87[EUR][1000 genomes]
rs2236141	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs2267131	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs2269578	0.87[EUR][1000 genomes]
rs2301428	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2347448	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28458474	0.87[EUR][1000 genomes]
rs2881634	0.90[EUR][1000 genomes]
rs34206997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34573837	0.81[EUR][1000 genomes]
rs34718288	0.85[EUR][1000 genomes]
rs34751572	0.81[EUR][1000 genomes]
rs35017742	0.87[EUR][1000 genomes]
rs35050306	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35814864	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35905502	0.81[EUR][1000 genomes]
rs36112964	0.83[EUR][1000 genomes]
rs4055	0.86[CEU][hapmap]
rs5752796	0.84[EUR][1000 genomes]
rs5752802	0.87[EUR][1000 genomes]
rs5752803	0.92[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs5752806	0.87[EUR][1000 genomes]
rs5752811	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs5752816	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs5762758	0.81[JPT][hapmap]
rs5762763	0.81[JPT][hapmap]
rs5762764	0.81[JPT][hapmap]
rs5762765	0.83[JPT][hapmap]
rs5762767	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs5762780	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs5762794	0.85[EUR][1000 genomes]
rs5762809	0.82[EUR][1000 genomes]
rs5762812	0.87[EUR][1000 genomes]
rs5762814	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs5762816	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs5762817	0.87[EUR][1000 genomes]
rs5762818	0.87[EUR][1000 genomes]
rs5762819	0.87[EUR][1000 genomes]
rs5762820	0.87[EUR][1000 genomes]
rs5762821	0.87[EUR][1000 genomes]
rs5762822	0.80[EUR][1000 genomes]
rs5762823	0.87[EUR][1000 genomes]
rs5762855	0.86[AFR][1000 genomes]
rs5762857	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59203761	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs59224170	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60468718	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs66471734	0.87[EUR][1000 genomes]
rs71327317	0.86[EUR][1000 genomes]
rs73170679	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs739196	0.86[CEU][hapmap];0.83[AFR][1000 genomes]
rs916332	0.83[AFR][1000 genomes]
rs9625595	0.86[AFR][1000 genomes]
rs9625600	0.86[AFR][1000 genomes]
rs9625612	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29252400-29261000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29255600-29260200	Weak transcription	Liver	Liver
3	chr22:29258800-29260400	Enhancers	HepG2	liver

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