Variant report

Variant rs13055370
Chromosome Location chr22:28189171-28189172
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:28170600-28192600 Weak transcription HMEC breast
2 chr22:28171600-28190400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr22:28176600-28191000 Weak transcription NHEK skin
4 chr22:28176800-28190000 Weak transcription Hela-S3 cervix
5 chr22:28180200-28191000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr22:28180200-28191200 Weak transcription Right Atrium heart
7 chr22:28181200-28189600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr22:28182800-28189800 Weak transcription Ovary ovary
9 chr22:28182800-28192800 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr22:28184400-28190600 Weak transcription Placenta Amnion Placenta Amnion
11 chr22:28186200-28190200 Enhancers ES-I3 Cell Line embryonic stem cell
12 chr22:28186200-28191000 Genic enhancers Fetal Stomach stomach
13 chr22:28186200-28196000 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
14 chr22:28186400-28190200 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr22:28186600-28192800 Weak transcription Lung lung
16 chr22:28186800-28196600 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr22:28187000-28189800 Enhancers Primary hematopoietic stem cells blood
18 chr22:28187000-28190000 Active TSS Fetal Brain Female brain
19 chr22:28187400-28189600 Enhancers Cortex derived primary cultured neurospheres brain
20 chr22:28187400-28190600 Enhancers H9 Cell Line embryonic stem cell
21 chr22:28187400-28190800 Bivalent Enhancer H1 Cell Line embryonic stem cell
22 chr22:28187400-28191200 Weak transcription Brain Inferior Temporal Lobe brain
23 chr22:28187600-28189600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr22:28187600-28189600 Weak transcription Fetal Muscle Trunk muscle
25 chr22:28187600-28190200 Bivalent Enhancer iPS-15b Cell Line embryonic stem cell
26 chr22:28187600-28191000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
27 chr22:28187600-28192600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr22:28187800-28189400 Bivalent Enhancer HUES64 Cell Line embryonic stem cell
29 chr22:28187800-28190200 Enhancers HUES6 Cell Line embryonic stem cell
30 chr22:28187800-28190400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr22:28187800-28190400 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
32 chr22:28187800-28192200 Active TSS Fetal Brain Male brain
33 chr22:28188000-28189400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr22:28188000-28189600 Enhancers Fetal Muscle Leg muscle
35 chr22:28188000-28189600 Enhancers Skeletal Muscle Female skeletal muscle
36 chr22:28188000-28190200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr22:28188200-28190200 Bivalent Enhancer HUES48 Cell Line embryonic stem cell
38 chr22:28188200-28190200 Bivalent Enhancer iPS-20b Cell Line embryonic stem cell
39 chr22:28188400-28189200 Enhancers ES-WA7 Cell Line embryonic stem cell
40 chr22:28188400-28190600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
41 chr22:28188400-28190800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
42 chr22:28188400-28192600 Enhancers Adipose Nuclei Adipose
43 chr22:28188600-28189200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr22:28188600-28189200 Enhancers Rectal Smooth Muscle rectum
45 chr22:28188600-28189200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
46 chr22:28188600-28189200 Transcr. at gene 5' and 3' NH-A brain
47 chr22:28188600-28198600 Active TSS Aorta Aorta
48 chr22:28188800-28189200 Enhancers Brain Angular Gyrus brain
49 chr22:28188800-28190600 Enhancers Psoas Muscle Psoas
50 chr22:28188800-28191000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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