Variant report

Variant	rs13058071
Chromosome Location	chr22:27708313-27708314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27707736..27710195-chr22:27719270..27720776,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CRYBA4-8	chr22:27706612-27711010	XLOC_014197
2	lnc-CRYBA4-8	chr22:27706612-27711010	ENSG00000226741

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13058091	0.83[AFR][1000 genomes]
rs36013403	0.83[AFR][1000 genomes]
rs57298963	0.83[AFR][1000 genomes]
rs66507623	0.83[AFR][1000 genomes]
rs71325236	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834166	chr22:27628570-27814359	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3359531	chr22:27706552-27710850	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27704200-27708600	Weak transcription	Right Atrium	heart
2	chr22:27705600-27708400	Enhancers	Fetal Brain Male	brain
3	chr22:27705800-27708400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr22:27705800-27709400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:27705800-27710800	Enhancers	Ovary	ovary
6	chr22:27706000-27708400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr22:27706000-27709200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:27706000-27709400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr22:27706000-27709600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr22:27706600-27708400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:27706800-27708800	Enhancers	Spleen	Spleen
12	chr22:27706800-27709000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr22:27706800-27709000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr22:27706800-27709400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr22:27706800-27715400	Enhancers	Fetal Intestine Large	intestine
16	chr22:27707000-27708400	Flanking Active TSS	Fetal Brain Female	brain
17	chr22:27707000-27708800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr22:27707000-27709400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr22:27707000-27710200	Enhancers	Duodenum Mucosa	Duodenum
20	chr22:27707000-27710800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr22:27707200-27710400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr22:27707200-27715400	Enhancers	Fetal Intestine Small	intestine
23	chr22:27707400-27710000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr22:27707400-27710800	Enhancers	Adipose Nuclei	Adipose
25	chr22:27707400-27714600	Enhancers	Colonic Mucosa	Colon
26	chr22:27707600-27709000	Bivalent Enhancer	Fetal Heart	heart
27	chr22:27707600-27709600	Enhancers	Primary hematopoietic stem cells	blood
28	chr22:27707600-27709800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr22:27707600-27710400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr22:27707800-27708400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr22:27707800-27708400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr22:27707800-27708400	Weak transcription	Brain Anterior Caudate	brain
33	chr22:27707800-27708400	Bivalent Enhancer	Fetal Kidney	kidney
34	chr22:27707800-27708400	Bivalent Enhancer	Fetal Lung	lung
35	chr22:27707800-27708400	Flanking Active TSS	NH-A	brain
36	chr22:27707800-27709600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr22:27707800-27709800	Enhancers	Osteobl	bone
38	chr22:27707800-27710600	Enhancers	Fetal Stomach	stomach
39	chr22:27708000-27708400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr22:27708000-27708400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr22:27708000-27708600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr22:27708000-27709200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr22:27708000-27709400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr22:27708000-27710000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr22:27708000-27710400	Enhancers	Aorta	Aorta
46	chr22:27708000-27710600	Enhancers	Brain Germinal Matrix	brain
47	chr22:27708200-27708400	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr22:27708200-27708400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
49	chr22:27708200-27708600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr22:27708200-27708600	Weak transcription	Lung	lung

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