Variant report

Variant	rs13058171
Chromosome Location	chr22:31097424-31097425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31094824..31097723-chr22:31102778..31104429,2	K562	blood:
2	chr22:31088691..31091818-chr22:31094131..31098942,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11703133	0.84[AMR][1000 genomes]
rs11703252	0.84[AMR][1000 genomes]
rs13053148	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13053186	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13053277	0.84[AMR][1000 genomes]
rs13054609	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13055971	0.90[AMR][1000 genomes]
rs13056033	0.87[AMR][1000 genomes]
rs13057481	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16988966	0.81[AMR][1000 genomes]
rs34366470	0.81[AMR][1000 genomes]
rs35317322	0.90[AMR][1000 genomes]
rs41279967	0.81[AMR][1000 genomes]
rs71331258	0.84[AMR][1000 genomes]
rs71331260	0.90[AMR][1000 genomes]
rs71331261	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs71331262	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8142472	0.84[AMR][1000 genomes]
rs8142842	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31091600-31097800	Weak transcription	NHLF	lung
2	chr22:31091800-31102000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr22:31092000-31101000	Weak transcription	Gastric	stomach
4	chr22:31092200-31098000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr22:31092200-31102200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
7	chr22:31092400-31101800	Weak transcription	Colon Smooth Muscle	Colon
8	chr22:31092400-31101800	Weak transcription	Spleen	Spleen
9	chr22:31092800-31097800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:31093200-31099800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr22:31094000-31097600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr22:31094000-31101800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr22:31094200-31097600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr22:31094200-31097800	Weak transcription	Brain Hippocampus Middle	brain
15	chr22:31094200-31097800	Weak transcription	Brain Substantia Nigra	brain
16	chr22:31094200-31099800	Weak transcription	Fetal Brain Male	brain
17	chr22:31094200-31099800	Weak transcription	Fetal Brain Female	brain
18	chr22:31094200-31101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr22:31094200-31101000	Weak transcription	Brain Germinal Matrix	brain
20	chr22:31094400-31097800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr22:31095600-31097600	Weak transcription	Brain Anterior Caudate	brain
22	chr22:31095600-31097800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr22:31095600-31097800	Weak transcription	K562	blood
24	chr22:31095800-31097600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr22:31095800-31100000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr22:31096000-31098000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr22:31096400-31099800	Weak transcription	Brain Angular Gyrus	brain
28	chr22:31097400-31102000	Enhancers	NHDF-Ad	bronchial

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