Variant report

Variant	rs13058460
Chromosome Location	chr22:29258509-29258510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10154819	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12170231	0.82[ASN][1000 genomes]
rs5752808	0.82[ASN][1000 genomes]
rs5752810	0.82[ASN][1000 genomes]
rs5752815	0.82[ASN][1000 genomes]
rs5762826	0.82[ASN][1000 genomes]
rs5762829	0.82[ASN][1000 genomes]
rs5762835	0.82[ASN][1000 genomes]
rs5762838	0.82[ASN][1000 genomes]
rs5762839	0.82[ASN][1000 genomes]
rs5762848	0.81[ASN][1000 genomes]
rs5762852	0.92[ASN][1000 genomes]
rs5762855	0.93[ASN][1000 genomes]
rs5997409	0.82[ASN][1000 genomes]
rs6005917	0.82[ASN][1000 genomes]
rs9625591	0.82[ASN][1000 genomes]
rs9625595	0.82[ASN][1000 genomes]
rs9625600	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29252400-29261000	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29253600-29258800	Weak transcription	HepG2	liver
3	chr22:29255600-29260200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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