Variant report

Variant	rs1305968
Chromosome Location	chr2:231472547-231472548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10177471	0.80[ASN][1000 genomes]
rs10183030	0.81[ASN][1000 genomes]
rs10190300	0.80[ASN][1000 genomes]
rs1173175	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1305969	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4343455	0.80[ASN][1000 genomes]
rs4972964	0.86[ASN][1000 genomes]
rs4973338	0.80[ASN][1000 genomes]
rs6436952	0.81[ASN][1000 genomes]
rs6436955	0.80[ASN][1000 genomes]
rs6436956	0.80[ASN][1000 genomes]
rs6436957	0.80[ASN][1000 genomes]
rs7587015	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231468800-231475000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:231469600-231474800	Weak transcription	GM12878-XiMat	blood
3	chr2:231469600-231475000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:231469600-231475000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:231469600-231475200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:231470200-231475800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:231472000-231473400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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