Variant report
| Variant | rs13060178 |
|---|---|
| Chromosome Location | chr3:159050499-159050500 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159045650..159047974-chr3:159049343..159051372,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11917412 | 0.81[CEU][hapmap] |
| rs13061579 | 0.81[CEU][hapmap] |
| rs13061619 | 0.81[CEU][hapmap] |
| rs13065679 | 0.81[CEU][hapmap] |
| rs13070853 | 0.81[CEU][hapmap] |
| rs13077258 | 0.81[CEU][hapmap] |
| rs13083244 | 0.81[CEU][hapmap] |
| rs13083887 | 0.81[CEU][hapmap];1.00[AFR][1000 genomes] |
| rs13085667 | 0.81[CEU][hapmap] |
| rs1448996 | 0.81[CEU][hapmap] |
| rs1839219 | 0.81[CEU][hapmap] |
| rs1906951 | 0.81[CEU][hapmap] |
| rs34202807 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs34566304 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs35342196 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs59583574 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61795455 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6784143 | 0.81[CEU][hapmap] |
| rs7620377 | 0.81[CEU][hapmap] |
| rs7644770 | 0.81[CEU][hapmap] |
| rs9848831 | 0.86[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
