Variant report

Variant	rs13061203
Chromosome Location	chr3:133519135-133519136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12493168	0.81[MEX][hapmap];0.86[TSI][hapmap]
rs6794676	1.00[CEU][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv4018	chr3:133485867-133530668	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs13061203	KY	cis	brain	BrainEAC
rs13061203	PCCB	cis	parietal	SCAN
rs13061203	TOPBP1	cis	parietal	SCAN
rs13061203	DBR1	cis	parietal	SCAN
rs13061203	SRPRB	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133518600-133519200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:133518600-133519400	Enhancers	Esophagus	oesophagus
3	chr3:133518600-133519400	Enhancers	Fetal Muscle Leg	muscle
4	chr3:133518600-133519400	Enhancers	NHEK	skin
5	chr3:133518600-133519600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:133518600-133519600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:133518600-133519600	Enhancers	Stomach Mucosa	stomach
8	chr3:133518600-133519600	Enhancers	HepG2	liver
9	chr3:133518600-133519600	Enhancers	HMEC	breast
10	chr3:133518600-133519800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:133518800-133519200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:133518800-133519200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:133518800-133519200	Enhancers	Hela-S3	cervix
14	chr3:133518800-133519200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:133519000-133519200	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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