Variant report

Variant	rs13061403
Chromosome Location	chr3:155510732-155510733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155508129..155511910-chr3:155589025..155592150,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13060077	0.85[ASN][1000 genomes]
rs13066198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095901	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13096944	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13099457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17349784	0.87[ASN][1000 genomes]
rs2201932	0.85[ASN][1000 genomes]
rs34112296	0.91[ASN][1000 genomes]
rs34317674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34729483	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35316639	0.80[ASN][1000 genomes]
rs35387126	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35404700	0.90[ASN][1000 genomes]
rs35582521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs369155	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs426236	0.85[ASN][1000 genomes]
rs4680216	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57183957	0.80[ASN][1000 genomes]
rs62284707	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6441012	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6794117	0.85[EUR][1000 genomes]
rs6806798	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7615604	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7642920	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7653384	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9811107	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1009635	chr3:155475438-155515484	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007915	chr3:155476547-155513397	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv592080	chr3:155479222-155511844	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv14416	chr3:155479247-155512774	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1006439	chr3:155481097-155515484	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1001756	chr3:155487190-155515484	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155487000-155511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
3	chr3:155488200-155523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155489000-155523200	Weak transcription	Thymus	Thymus
5	chr3:155491600-155523200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:155494400-155523600	Weak transcription	Small Intestine	intestine
7	chr3:155500400-155523200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:155500600-155513600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:155500800-155522600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:155504200-155511600	Weak transcription	HSMMtube	muscle
11	chr3:155506600-155523000	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:155506800-155523200	Weak transcription	Fetal Kidney	kidney
13	chr3:155507000-155511400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:155507400-155522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:155508800-155510800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr3:155508800-155511000	Strong transcription	Brain Hippocampus Middle	brain
17	chr3:155508800-155522800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:155508800-155523200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:155509000-155523400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:155509000-155523400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:155509200-155511600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:155509200-155523200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:155509200-155523200	Weak transcription	Brain Germinal Matrix	brain
24	chr3:155509400-155511000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:155509400-155511000	Strong transcription	Primary hematopoietic stem cells	blood
26	chr3:155509400-155511200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:155509400-155511400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:155509400-155519000	Weak transcription	K562	blood
29	chr3:155509400-155522600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:155509400-155523000	Weak transcription	A549	lung
31	chr3:155509400-155523200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:155509600-155511200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:155509600-155514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:155509600-155523200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:155509600-155523200	Weak transcription	Esophagus	oesophagus
36	chr3:155509600-155523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:155509800-155510800	Weak transcription	Primary T cells from cord blood	blood
38	chr3:155509800-155514400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:155509800-155515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:155509800-155522400	Weak transcription	Dnd41	blood
41	chr3:155509800-155522800	Weak transcription	Spleen	Spleen
42	chr3:155509800-155523000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:155509800-155523000	Weak transcription	Pancreas	Pancrea
44	chr3:155509800-155523200	Weak transcription	Aorta	Aorta
45	chr3:155509800-155523200	Weak transcription	Right Ventricle	heart
46	chr3:155509800-155523400	Weak transcription	Fetal Lung	lung
47	chr3:155510000-155511200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:155510000-155514400	Weak transcription	Liver	Liver
49	chr3:155510000-155514600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:155510000-155514800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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