Variant report

Variant	rs13063736
Chromosome Location	chr3:141059515-141059516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13324219	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13434224	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1511380	0.88[EUR][1000 genomes]
rs4325905	0.89[EUR][1000 genomes]
rs7616781	0.89[EUR][1000 genomes]
rs9823774	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9823785	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9829470	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141061600	Weak transcription	Small Intestine	intestine
2	chr3:141056400-141079400	Weak transcription	A549	lung
3	chr3:141056600-141060000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:141056600-141061400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:141056600-141064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:141056600-141064800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:141056800-141060400	Weak transcription	HSMMtube	muscle
8	chr3:141057800-141061800	Weak transcription	HepG2	liver
9	chr3:141058200-141061800	Weak transcription	Liver	Liver
10	chr3:141058200-141065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:141058400-141059800	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links