Variant report

Variant	rs13064869
Chromosome Location	chr3:134912016-134912017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11706065	1.00[YRI][hapmap]
rs11712935	1.00[YRI][hapmap]
rs11718934	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134885600-134912200	Weak transcription	Brain Germinal Matrix	brain
2	chr3:134889000-134924600	Weak transcription	Brain Anterior Caudate	brain
3	chr3:134907200-134913400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:134907400-134922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:134909000-134932400	Weak transcription	Psoas Muscle	Psoas
6	chr3:134909800-134912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:134910000-134913600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:134910000-134914800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:134910000-134926400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:134910200-134923400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:134910800-134932600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:134911000-134922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:134911400-134912600	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:134911400-134912600	Enhancers	Brain Substantia Nigra	brain
15	chr3:134911400-134912800	Enhancers	Brain Hippocampus Middle	brain
16	chr3:134911400-134913600	Strong transcription	Fetal Brain Female	brain
17	chr3:134911600-134912600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr3:134911800-134912600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:134912000-134912800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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