Variant report

Variant	rs13065014
Chromosome Location	chr3:86060903-86060904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:86060764-86060903	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PRKRIRP2	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11127913	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11127914	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11719943	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12486099	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12486982	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12488773	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493881	0.82[AMR][1000 genomes]
rs13073604	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083257	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2324975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289000	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35012249	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35242846	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35259978	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35772683	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35885688	0.82[AMR][1000 genomes]
rs36080783	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4688895	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56339824	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56760958	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62261591	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62261592	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62261593	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62263325	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68058340	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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