Variant report

Variant	rs13065649
Chromosome Location	chr3:135303443-135303444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12489315	0.97[EUR][1000 genomes]
rs12496440	0.96[EUR][1000 genomes]
rs13065615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6782493	0.84[ASN][1000 genomes]
rs6808137	0.84[EUR][1000 genomes]
rs73862579	0.89[ASN][1000 genomes]
rs7612342	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135303200-135304000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:135303200-135304000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:135303400-135303600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr3:135303400-135303600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:135303400-135303800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr3:135303400-135303800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:135303400-135304000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr3:135303400-135304400	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links