Variant report

Variant	rs13066837
Chromosome Location	chr3:60021470-60021471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11711227	0.86[CHB][hapmap]
rs11718208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11718957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11720431	0.95[ASN][1000 genomes]
rs13058814	0.84[CHB][hapmap]
rs13069706	0.84[CHB][hapmap]
rs13070338	0.92[CHB][hapmap]
rs13075738	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs13088111	0.86[CHB][hapmap]
rs17322850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17325451	0.83[CHB][hapmap]
rs2736787	0.83[CHB][hapmap]
rs35122656	0.90[ASN][1000 genomes]
rs3843360	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4327338	0.90[ASN][1000 genomes]
rs6779703	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60013400-60022600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:60016000-60021600	Weak transcription	Dnd41	blood
3	chr3:60017200-60022800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:60020200-60030000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:60021000-60021600	Weak transcription	Fetal Thymus	thymus
6	chr3:60021000-60024800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:60021000-60031600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:60021200-60022200	Enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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