Variant report

Variant	rs13071906
Chromosome Location	chr3:21038133-21038134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21018630..21020462-chr3:21036904..21039487,2	K562	blood:
2	chr3:21027317..21031156-chr3:21036432..21038394,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13063863	1.00[ASN][1000 genomes]
rs13072920	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073288	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078058	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086885	0.83[ASN][1000 genomes]
rs13091461	0.84[AFR][1000 genomes]
rs17813190	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1908990	0.84[AFR][1000 genomes]
rs34018991	1.00[ASN][1000 genomes]
rs34043148	0.93[EUR][1000 genomes]
rs34063240	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34168326	1.00[ASN][1000 genomes]
rs34173645	0.84[AFR][1000 genomes]
rs34326523	1.00[ASN][1000 genomes]
rs34333298	0.84[AFR][1000 genomes]
rs34345518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34381434	0.89[AFR][1000 genomes]
rs34463436	1.00[ASN][1000 genomes]
rs34542841	1.00[ASN][1000 genomes]
rs34764860	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34776272	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34845248	0.84[AFR][1000 genomes]
rs34862381	1.00[ASN][1000 genomes]
rs34901191	1.00[ASN][1000 genomes]
rs35098176	0.84[AFR][1000 genomes]
rs35113380	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141316	0.95[AFR][1000 genomes]
rs35193412	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35232474	1.00[ASN][1000 genomes]
rs35233561	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35655300	0.84[AFR][1000 genomes]
rs35664446	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35813037	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35850678	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36013671	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36029973	1.00[ASN][1000 genomes]
rs66731871	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66777149	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66782140	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67018244	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67159059	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67530289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67882372	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68182905	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034603	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044986	0.89[AFR][1000 genomes]
rs73044987	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876606	chr3:20957851-21049235	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1014809	chr3:21024655-21060336	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21032000-21040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21033400-21039600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:21033800-21039000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:21035400-21038400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:21035600-21038800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:21036200-21038600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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