Variant report

Variant	rs13072657
Chromosome Location	chr3:156827318-156827319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156807605..156809199-chr3:156827246..156830042,2	K562	blood:
2	chr3:156826801..156832803-chr3:156862347..156866322,5	K562	blood:
3	chr3:156820447..156822637-chr3:156825725..156827377,2	K562	blood:
4	chr3:156393308..156395155-chr3:156824794..156827365,2	K562	blood:
5	chr3:156804281..156807670-chr3:156825990..156830438,8	K562	blood:
6	chr3:156805364..156807403-chr3:156827263..156830005,3	K562	blood:
7	chr3:156799325..156801188-chr3:156826039..156828817,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000241544	Chromatin interaction
ENSG00000241135	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13080377	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv963492	chr3:156822431-156829339	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:156817800-156828600	Weak transcription	Pancreas	Pancrea
4	chr3:156818600-156828800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:156819200-156827600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
7	chr3:156821600-156828600	Weak transcription	Brain Angular Gyrus	brain
8	chr3:156821600-156828600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:156821800-156829400	Enhancers	Colon Smooth Muscle	Colon
10	chr3:156822000-156828400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:156822200-156827400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:156822200-156828600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:156822200-156832800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:156822600-156828400	Weak transcription	NHLF	lung
15	chr3:156823000-156830200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:156823000-156831800	Weak transcription	NHEK	skin
17	chr3:156823200-156829400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:156823400-156827400	Weak transcription	Spleen	Spleen
19	chr3:156823400-156828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:156823400-156828600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:156823600-156832800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:156824000-156829400	Weak transcription	Fetal Thymus	thymus
23	chr3:156824200-156827600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr3:156824200-156830200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:156824800-156828200	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:156824800-156829600	Enhancers	Fetal Stomach	stomach
27	chr3:156825400-156827600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr3:156825400-156829000	Enhancers	Ovary	ovary
29	chr3:156825800-156828400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:156825800-156828800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:156825800-156829200	Enhancers	Placenta	Placenta
32	chr3:156826000-156828600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:156826200-156827600	Weak transcription	Fetal Lung	lung
34	chr3:156826200-156827600	Weak transcription	Stomach Mucosa	stomach
35	chr3:156826400-156829000	Enhancers	Right Atrium	heart
36	chr3:156826400-156830800	Enhancers	Left Ventricle	heart
37	chr3:156826600-156828600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:156826600-156828600	Weak transcription	Liver	Liver
39	chr3:156826600-156828600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr3:156826600-156828600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:156826600-156828800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:156826800-156827600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:156826800-156828400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:156826800-156828600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:156826800-156828600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:156826800-156828600	Weak transcription	Adipose Nuclei	Adipose
47	chr3:156826800-156828600	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:156826800-156828600	Weak transcription	Brain Substantia Nigra	brain
49	chr3:156826800-156828800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:156826800-156829000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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