Variant report

Variant	rs13074544
Chromosome Location	chr3:61409486-61409487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11130841	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13070301	0.87[ASN][1000 genomes]
rs13087522	0.94[EUR][1000 genomes]
rs13093530	0.93[EUR][1000 genomes]
rs13098198	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1540554	0.89[ASN][1000 genomes]
rs17031654	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34224499	0.93[EUR][1000 genomes]
rs59898330	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628236	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7628242	0.93[ASN][1000 genomes]
rs7635979	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876867	chr3:61054494-61474575	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1008399	chr3:61176965-61461349	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv876869	chr3:61357417-61444443	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61408600-61409800	Enhancers	HepG2	liver
2	chr3:61408800-61409600	Enhancers	Fetal Brain Male	brain
3	chr3:61408800-61409800	Enhancers	Fetal Heart	heart
4	chr3:61409000-61409600	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links