Variant report
| Variant | rs13075101 |
|---|---|
| Chromosome Location | chr3:190613450-190613451 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| GMNC | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10937450 | 0.90[ASN][1000 genomes] |
| rs13065568 | 0.88[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13067365 | 0.96[ASN][1000 genomes] |
| rs13070564 | 0.91[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13081641 | 0.84[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1393048 | 0.91[ASN][1000 genomes] |
| rs34165430 | 0.95[ASN][1000 genomes] |
| rs34859790 | 0.90[ASN][1000 genomes] |
| rs6799249 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9290957 | 0.88[ASN][1000 genomes] |
| rs9852162 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916316 | chr3:190308450-190801722 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv878095 | chr3:190586181-190657163 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv878096 | chr3:190586181-190675956 | Enhancers Bivalent Enhancer Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv878097 | chr3:190597323-190650051 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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