Variant report

Variant	rs13075233
Chromosome Location	chr3:47420627-47420628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47420606-47423290	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:47420360-47423290	HepG2	liver:	n/a	n/a
3	POLR2A	chr3:47420304-47420806	HepG2	liver:	n/a	n/a
4	IRF1	chr3:47420354-47420941	K562	blood:	n/a	chr3:47420682-47420692 chr3:47420682-47420696
5	POLR2A	chr3:47420359-47423028	K562	blood:	n/a	n/a
6	CBX3	chr3:47420560-47421486	K562	blood:	n/a	n/a
7	POLR2A	chr3:47420536-47423383	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr3:47420558-47423666	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:47420531-47420960	PANC-1	pancreas:	n/a	n/a
10	HEY1	chr3:47420212-47423186	HepG2	liver:	n/a	chr3:47422106-47422121 chr3:47423014-47423029
11	POLR2A	chr3:47420613-47420926	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr3:47420446-47423270	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr3:47419974-47423464	HepG2	liver:	n/a	n/a
14	RCOR1	chr3:47420512-47421478	HepG2	liver:	n/a	n/a
15	MAX	chr3:47420577-47423324	HepG2	liver:	n/a	chr3:47421811-47421822
16	POLR2A	chr3:47420275-47420900	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr3:47420187-47423135	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:47403977..47407169-chr3:47419054..47422081,3	K562	blood:
2	chr3:47023369..47025258-chr3:47417930..47420658,2	MCF-7	breast:
3	chr3:47321814..47325452-chr3:47418885..47424380,8	K562	blood:
4	chr3:47420219..47422080-chr3:47430722..47433215,2	K562	blood:
5	chr3:47419982..47424786-chr3:47552828..47558423,7	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCAP-1	chr3:47420579-47422489	ENSG00000260236.1
2	lnc-SCAP-1	chr3:47420214-47422490	NONHSAT089496

Variant related genes	Relation type
PTPN23	TF binding region
ENSG00000088727	Chromatin interaction
ENSG00000114648	Chromatin interaction
ENSG00000163832	Chromatin interaction
ENSG00000160799	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1038394	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1076394	0.96[CEU][hapmap];0.80[GIH][hapmap];0.93[TSI][hapmap]
rs10865946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130123	0.92[CEU][hapmap];0.81[JPT][hapmap];0.80[LWK][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap]
rs11130124	0.96[CEU][hapmap];0.93[TSI][hapmap]
rs11130126	0.88[CEU][hapmap];0.87[TSI][hapmap]
rs11130127	0.88[EUR][1000 genomes]
rs11130128	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130129	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130132	0.83[EUR][1000 genomes]
rs11130133	0.80[EUR][1000 genomes]
rs11130137	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs11705957	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710013	0.96[CEU][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap]
rs11710121	0.88[CEU][hapmap]
rs11710322	0.96[CEU][hapmap];0.80[GIH][hapmap];0.93[TSI][hapmap]
rs11711265	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.80[EUR][1000 genomes]
rs11711824	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11712445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11716763	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs11719877	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11914913	0.80[EUR][1000 genomes]
rs11914932	0.81[EUR][1000 genomes]
rs11915074	0.88[CEU][hapmap]
rs11920853	0.88[CEU][hapmap]
rs11925823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11927371	0.85[EUR][1000 genomes]
rs12486969	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12487736	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12489046	0.86[EUR][1000 genomes]
rs12490058	0.82[EUR][1000 genomes]
rs12492433	0.86[EUR][1000 genomes]
rs12495169	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs12497225	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12630641	0.81[EUR][1000 genomes]
rs12632132	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12636851	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13059519	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs13064843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13079098	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13094438	0.96[CEU][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap]
rs1531875	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1564760	0.81[GIH][hapmap];0.90[YRI][hapmap]
rs1638676	0.85[ASW][hapmap];0.96[CEU][hapmap];0.80[GIH][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap]
rs17080872	0.87[CHB][hapmap];0.89[CHD][hapmap]
rs17410853	0.88[CEU][hapmap]
rs17411375	0.96[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs17784882	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs1872164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2062278	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2101247	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132173	0.85[CEU][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap]
rs2159400	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs2276853	0.96[CEU][hapmap];0.93[TSI][hapmap]
rs2276854	0.96[CEU][hapmap];0.93[TSI][hapmap]
rs2291298	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs295428	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.84[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs295433	0.95[YRI][hapmap]
rs295441	0.96[CEU][hapmap];0.89[YRI][hapmap]
rs295442	0.96[CEU][hapmap];0.80[GIH][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap]
rs295449	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs295458	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs295461	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3736177	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816779	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.90[LWK][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs4241548	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4683326	0.96[CEU][hapmap]
rs4858805	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858811	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4858824	1.00[CEU][hapmap]
rs4858848	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858868	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858888	0.89[EUR][1000 genomes]
rs4858890	0.83[EUR][1000 genomes]
rs4858893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4858894	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs553989	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56032309	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56351005	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57346147	0.99[EUR][1000 genomes]
rs59586735	0.86[EUR][1000 genomes]
rs60369822	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62246474	0.88[EUR][1000 genomes]
rs62248580	0.90[EUR][1000 genomes]
rs62248599	0.84[EUR][1000 genomes]
rs6765990	0.82[EUR][1000 genomes]
rs6768221	0.88[CEU][hapmap]
rs6780013	0.92[CEU][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs6787422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6791842	0.96[CEU][hapmap]
rs6792461	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6792488	0.86[EUR][1000 genomes]
rs6800271	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73081205	0.84[EUR][1000 genomes]
rs7613282	0.87[EUR][1000 genomes]
rs7628631	0.81[EUR][1000 genomes]
rs7641010	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7649234	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7651194	0.82[EUR][1000 genomes]
rs7651762	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs807810	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs807931	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs807932	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap]
rs807936	0.85[ASW][hapmap];0.96[CEU][hapmap];0.80[GIH][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap]
rs811115	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs8180040	0.86[EUR][1000 genomes]
rs878659	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs922957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683033	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9683177	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv1807553	chr3:47393616-47470763	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv3802	chr3:47396674-47441951	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs13075233	PRKAR2A	cis	cerebellum	SCAN
rs13075233	RTP3	cis	lesional skin	skin_eQTL
rs13075233	HYAL2	cis	cerebellum	SCAN
rs13075233	AMIGO3	cis	cerebellum	SCAN
rs13075233	IFRD2	cis	parietal	SCAN
rs13075233	SCAP	cis	parietal	SCAN
rs13075233	C3orf75	cis	cerebellum	SCAN
rs13075233	KLHL18	Cis_1M	lymphoblastoid	RTeQTL
rs13075233	CCDC12	cis	cerebellum	SCAN
rs13075233	SETD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47401600-47421200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:47413400-47420800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:47413600-47421000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:47414200-47421000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:47416200-47420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:47417600-47421000	Weak transcription	NHLF	lung
7	chr3:47418000-47421600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:47418600-47421000	Weak transcription	Brain Anterior Caudate	brain
9	chr3:47418800-47421000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:47419000-47420800	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:47419000-47421000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:47419000-47421000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:47419000-47421600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:47419200-47420800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:47419200-47420800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:47419200-47420800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:47419200-47420800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:47419200-47420800	Weak transcription	Placenta	Placenta
19	chr3:47419200-47420800	Weak transcription	Left Ventricle	heart
20	chr3:47419200-47420800	Weak transcription	Lung	lung
21	chr3:47419200-47420800	Weak transcription	Pancreas	Pancrea
22	chr3:47419200-47421000	Weak transcription	Primary B cells from cord blood	blood
23	chr3:47419200-47421000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr3:47419200-47421000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:47419200-47421000	Weak transcription	Esophagus	oesophagus
26	chr3:47419200-47421000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr3:47419200-47421200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:47419400-47420800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:47420200-47421000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:47420200-47421200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:47420200-47421400	Enhancers	Ovary	ovary
32	chr3:47420200-47421600	Enhancers	Small Intestine	intestine
33	chr3:47420400-47420800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:47420400-47420800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:47420400-47420800	Enhancers	Fetal Intestine Large	intestine
36	chr3:47420400-47420800	Enhancers	Fetal Intestine Small	intestine
37	chr3:47420400-47420800	Weak transcription	Spleen	Spleen
38	chr3:47420400-47421000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:47420400-47421000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:47420400-47421000	Enhancers	Colon Smooth Muscle	Colon
41	chr3:47420400-47421000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr3:47420400-47421400	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr3:47420400-47421400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr3:47420400-47421400	Flanking Active TSS	GM12878-XiMat	blood
45	chr3:47420400-47421600	Flanking Active TSS	HepG2	liver
46	chr3:47420600-47420800	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr3:47420600-47420800	Flanking Active TSS	Dnd41	blood
48	chr3:47420600-47421000	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr3:47420600-47421000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:47420600-47421000	Enhancers	Muscle Satellite Cultured Cells	--

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