Variant report

Variant	rs13079510
Chromosome Location	chr3:34227690-34227691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10510658	0.84[EUR][1000 genomes]
rs11129588	0.85[EUR][1000 genomes]
rs11129589	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11129590	0.87[EUR][1000 genomes]
rs11708781	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11710773	0.87[EUR][1000 genomes]
rs11714874	0.85[EUR][1000 genomes]
rs11717932	0.83[EUR][1000 genomes]
rs11920101	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927616	0.84[EUR][1000 genomes]
rs11927965	0.87[EUR][1000 genomes]
rs13063086	0.85[EUR][1000 genomes]
rs13065915	0.81[EUR][1000 genomes]
rs13083357	0.83[EUR][1000 genomes]
rs1866754	0.83[EUR][1000 genomes]
rs7626572	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7627333	0.84[EUR][1000 genomes]
rs968102	0.85[EUR][1000 genomes]
rs968103	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34225200-34227800	Enhancers	Thymus	Thymus
2	chr3:34226600-34228200	Enhancers	Fetal Intestine Small	intestine
3	chr3:34227200-34228200	Enhancers	Fetal Intestine Large	intestine
4	chr3:34227400-34228200	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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