Variant report

Variant	rs13080171
Chromosome Location	chr3:55941438-55941439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11707255	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11712729	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11713228	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11713587	0.82[EUR][1000 genomes]
rs11715747	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717188	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11719944	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11916416	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11917737	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11923626	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13066051	0.82[EUR][1000 genomes]
rs13071068	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13073082	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13076081	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13077670	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13087971	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13097006	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13098328	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379711	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458056	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1458059	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812146	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2034916	0.81[EUR][1000 genomes]
rs34120832	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34851422	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34917685	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4974151	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974153	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs922003	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55930200-55943200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:55936600-55944000	Enhancers	Fetal Heart	heart
3	chr3:55937000-55941600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:55939200-55942000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:55941000-55941600	Enhancers	Gastric	stomach
6	chr3:55941000-55943800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:55941200-55942400	Enhancers	Stomach Mucosa	stomach
8	chr3:55941200-55942800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:55941400-55942000	Enhancers	Brain Germinal Matrix	brain
10	chr3:55941400-55944800	Weak transcription	Hela-S3	cervix

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