Variant report

Variant	rs13081059
Chromosome Location	chr3:134235592-134235593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134213901..134215499-chr3:134234505..134236768,2	MCF-7	breast:
2	chr3:134230319..134232956-chr3:134234483..134236729,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10935116	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12487438	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134206400-134241200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:134206600-134251600	Weak transcription	Colonic Mucosa	Colon
3	chr3:134206800-134236400	Weak transcription	Hela-S3	cervix
4	chr3:134207000-134235800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:134207000-134235800	Weak transcription	A549	lung
6	chr3:134207000-134235800	Weak transcription	HepG2	liver
7	chr3:134207000-134241600	Weak transcription	Psoas Muscle	Psoas
8	chr3:134213800-134246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:134215800-134242200	Weak transcription	NHEK	skin
10	chr3:134216000-134235800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:134216200-134235800	Weak transcription	HSMMtube	muscle
12	chr3:134216200-134236400	Weak transcription	NH-A	brain
13	chr3:134222000-134245800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:134222400-134235800	Weak transcription	NHLF	lung
15	chr3:134223200-134237000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:134223600-134236200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:134223600-134240800	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:134224400-134237600	Weak transcription	Fetal Brain Female	brain
19	chr3:134224600-134236000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:134224600-134237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:134224800-134238800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:134224800-134241200	Weak transcription	Brain Germinal Matrix	brain
23	chr3:134224800-134245800	Weak transcription	Pancreas	Pancrea
24	chr3:134225000-134237600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:134225000-134255800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:134225200-134241200	Weak transcription	Fetal Kidney	kidney
27	chr3:134225200-134256200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:134226400-134241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:134226600-134238800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:134227000-134235800	Weak transcription	NHDF-Ad	bronchial
31	chr3:134228200-134235800	Weak transcription	HSMM	muscle
32	chr3:134228400-134235800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:134230200-134237400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:134230200-134241200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:134230400-134240800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:134230600-134238400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:134230600-134238800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr3:134230800-134236000	Weak transcription	Spleen	Spleen
39	chr3:134230800-134236400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:134230800-134236400	Weak transcription	Liver	Liver
41	chr3:134230800-134237400	Weak transcription	Fetal Stomach	stomach
42	chr3:134230800-134237800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr3:134230800-134238000	Weak transcription	Fetal Intestine Small	intestine
44	chr3:134230800-134238800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:134230800-134242000	Weak transcription	Left Ventricle	heart
46	chr3:134230800-134251800	Weak transcription	Aorta	Aorta
47	chr3:134230800-134256000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:134231000-134235800	Weak transcription	Osteobl	bone
49	chr3:134231000-134236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:134231000-134236600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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