Variant report

Variant	rs13081156
Chromosome Location	chr3:43005217-43005218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13078406	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13081266	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17388512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2288370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36132109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55946409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6788947	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
2	chr3:42978600-43020400	Weak transcription	Ovary	ovary
3	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
4	chr3:42994600-43006000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:43003600-43005400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:43003600-43005600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:43003600-43005600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:43003600-43005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:43003600-43006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:43003600-43011400	Weak transcription	Liver	Liver
11	chr3:43003600-43011600	Weak transcription	Fetal Intestine Small	intestine
12	chr3:43003800-43005400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:43003800-43005600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:43003800-43015400	Weak transcription	Fetal Stomach	stomach
15	chr3:43005200-43007600	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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