Variant report

Variant	rs1308150
Chromosome Location	chr1:151675618-151675619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151668533..151670449-chr1:151674606..151677478,3	MCF-7	breast:
2	chr1:151430268..151431777-chr1:151675061..151677444,2	MCF-7	breast:
3	chr1:151671136..151674505-chr1:151674889..151678422,3	K562	blood:
4	chr1:151674334..151676569-chr1:151677711..151679757,3	MCF-7	breast:
5	chr1:151671136..151673707-chr1:151674889..151677650,3	K562	blood:
6	chr1:151674905..151676971-chr1:151691184..151693969,2	MCF-7	breast:
7	chr1:151674632..151676262-chr1:151762381..151764969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227045	Chromatin interaction
ENSG00000182134	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000203288	Chromatin interaction

rs_ID	r²[population]
rs10749663	1.00[MEX][hapmap]
rs1196345	1.00[AMR][1000 genomes]
rs1196350	1.00[YRI][hapmap]
rs1196462	1.00[YRI][hapmap]
rs1196466	0.92[YRI][hapmap]
rs1196469	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs1308157	0.83[AFR][1000 genomes]
rs1418822	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4970959	1.00[MEX][hapmap]
rs74125849	1.00[AMR][1000 genomes]
rs7533032	1.00[MEX][hapmap]
rs939592	0.93[YRI][hapmap]
rs9661205	1.00[MEX][hapmap]

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:151665400-151676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:151666000-151685400	Weak transcription	A549	lung
7	chr1:151666400-151675800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:151666600-151676000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:151667000-151687400	Weak transcription	K562	blood
10	chr1:151667800-151686000	Weak transcription	HMEC	breast
11	chr1:151669600-151681200	Strong transcription	Fetal Brain Female	brain
12	chr1:151670000-151676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
14	chr1:151671200-151675800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:151671400-151682600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:151672000-151678000	Weak transcription	Stomach Mucosa	stomach
17	chr1:151672200-151680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:151672400-151684800	Weak transcription	Small Intestine	intestine
19	chr1:151672800-151678400	Weak transcription	Colonic Mucosa	Colon
20	chr1:151673200-151675800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:151673200-151677000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:151673600-151678600	Strong transcription	Brain Germinal Matrix	brain
23	chr1:151673800-151676400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr1:151673800-151677000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:151673800-151680400	Strong transcription	Fetal Intestine Large	intestine
26	chr1:151673800-151682400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:151673800-151685200	Weak transcription	Fetal Kidney	kidney
28	chr1:151674000-151676000	Strong transcription	Fetal Intestine Small	intestine
29	chr1:151674000-151676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:151674000-151677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:151674000-151677200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:151674000-151677400	Weak transcription	Osteobl	bone
33	chr1:151674000-151677800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:151674000-151677800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:151674000-151678000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:151674000-151678600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:151674000-151682400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:151674000-151685400	Weak transcription	Gastric	stomach
39	chr1:151674200-151675800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr1:151674200-151675800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr1:151674200-151675800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:151674200-151677600	Weak transcription	NHLF	lung
43	chr1:151674200-151677800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr1:151674200-151679800	Weak transcription	Right Ventricle	heart
45	chr1:151674200-151683200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr1:151674200-151683200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr1:151674400-151676000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr1:151674400-151676200	Enhancers	HepG2	liver
50	chr1:151674400-151677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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