Variant report

Variant	rs13083038
Chromosome Location	chr3:47065142-47065143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13060505	1.00[GIH][hapmap]
rs13096025	0.93[EUR][1000 genomes]
rs35107635	0.86[EUR][1000 genomes]
rs71328916	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7651753	1.00[GIH][hapmap]
rs9841902	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3461834	chr3:46977730-47173228	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3461835	chr3:46977822-47173168	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv3461836	chr3:46977822-47173168	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
5	nsv997261	chr3:47054766-47133680	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47057200-47066600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:47058800-47069800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:47059400-47066400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:47059400-47066400	Strong transcription	Primary T cells from cord blood	blood
5	chr3:47059800-47067200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr3:47059800-47073000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:47060000-47066400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:47060400-47066600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:47060600-47073800	Weak transcription	Lung	lung
10	chr3:47061000-47076200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:47061000-47079000	Weak transcription	Fetal Brain Male	brain
12	chr3:47061200-47069600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:47061200-47069800	Weak transcription	Spleen	Spleen
14	chr3:47061200-47072400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:47061200-47076000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:47061200-47083000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:47061400-47065800	Strong transcription	Fetal Thymus	thymus
18	chr3:47061400-47066400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:47061400-47069600	Weak transcription	HMEC	breast
20	chr3:47061400-47073600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:47061400-47074600	Weak transcription	Hela-S3	cervix
22	chr3:47061400-47076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:47061400-47076200	Weak transcription	HSMMtube	muscle
24	chr3:47061600-47066200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:47061600-47066400	Weak transcription	NH-A	brain
26	chr3:47061800-47066200	Weak transcription	Brain Angular Gyrus	brain
27	chr3:47061800-47066400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:47061800-47066600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:47061800-47069800	Weak transcription	Placenta	Placenta
30	chr3:47061800-47074200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:47061800-47074600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:47062000-47066400	Weak transcription	Brain Anterior Caudate	brain
33	chr3:47062000-47066600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:47062000-47069600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:47062000-47069600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr3:47062000-47069600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr3:47062000-47070200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:47062000-47071800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:47062000-47075400	Weak transcription	A549	lung
40	chr3:47062200-47066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:47062200-47066400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:47062200-47066400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:47062200-47069600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:47062200-47069600	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:47062200-47070200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:47062200-47073400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:47062200-47073400	Weak transcription	GM12878-XiMat	blood
48	chr3:47062200-47075000	Weak transcription	Brain Germinal Matrix	brain
49	chr3:47062200-47075400	Weak transcription	Aorta	Aorta
50	chr3:47062200-47076000	Weak transcription	Fetal Kidney	kidney

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