Variant report

Variant	rs13084615
Chromosome Location	chr3:112338027-112338028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112337421..112339206-chr3:112358974..112360734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16859847	0.85[CEU][hapmap]
rs16859875	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs17233531	0.81[TSI][hapmap]
rs17235583	0.84[EUR][1000 genomes]
rs55987232	0.83[EUR][1000 genomes]
rs6438085	0.85[EUR][1000 genomes]
rs6774572	0.84[CEU][hapmap];0.83[GIH][hapmap];0.85[EUR][1000 genomes]
rs6774776	0.85[EUR][1000 genomes]
rs6789723	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73214207	0.85[EUR][1000 genomes]
rs73231362	0.85[EUR][1000 genomes]
rs73231368	0.85[EUR][1000 genomes]
rs73231371	0.85[EUR][1000 genomes]
rs7636528	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs9855853	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858844	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112282400-112340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:112312600-112346200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:112312600-112347200	Weak transcription	Fetal Intestine Large	intestine
4	chr3:112316200-112342800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:112318000-112341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:112327800-112340600	Weak transcription	Fetal Kidney	kidney
7	chr3:112329600-112341800	Strong transcription	HSMM	muscle
8	chr3:112330200-112338400	Strong transcription	HSMMtube	muscle
9	chr3:112330400-112346800	Strong transcription	NHLF	lung
10	chr3:112331200-112351600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:112331400-112354800	Weak transcription	Psoas Muscle	Psoas
12	chr3:112331600-112338200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:112331600-112338400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:112332800-112339000	Strong transcription	Placenta Amnion	Placenta Amnion
15	chr3:112334000-112338400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:112335000-112340000	Weak transcription	Aorta	Aorta
17	chr3:112335200-112339800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:112335200-112340400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:112335200-112342200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr3:112335200-112345400	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:112336000-112342000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:112336200-112342000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:112336200-112347400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:112336200-112351600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:112336400-112341200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:112336400-112342000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:112336400-112346800	Weak transcription	Fetal Stomach	stomach
28	chr3:112336600-112351400	Weak transcription	Fetal Lung	lung
29	chr3:112336600-112355800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:112336800-112338200	Weak transcription	NHEK	skin
31	chr3:112337000-112340000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:112337000-112346800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:112337400-112339000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:112337400-112339200	Genic enhancers	Osteobl	bone
35	chr3:112337600-112338800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:112337600-112339000	Genic enhancers	A549	lung
37	chr3:112337600-112340000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:112337600-112340000	Weak transcription	Ovary	ovary
39	chr3:112337800-112338200	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:112337800-112338400	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr3:112337800-112338600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:112337800-112338600	Enhancers	GM12878-XiMat	blood
43	chr3:112337800-112338600	Enhancers	HUVEC	blood vessel
44	chr3:112337800-112338600	Enhancers	K562	blood
45	chr3:112337800-112338600	Genic enhancers	NH-A	brain
46	chr3:112337800-112338800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:112337800-112338800	Genic enhancers	Muscle Satellite Cultured Cells	--
48	chr3:112337800-112340600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:112338000-112338200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:112338000-112338800	Enhancers	NHDF-Ad	bronchial

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