Variant report

Variant	rs13086327
Chromosome Location	chr3:112129161-112129162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13062867	0.86[AFR][1000 genomes]
rs13093653	0.86[AFR][1000 genomes]
rs2078116	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002567	chr3:112088498-112144063	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2830128	chr3:112090292-112144026	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv591294	chr3:112091220-112208750	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv997659	chr3:112099148-112135687	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13086327	ATG3	cis	temporal cortex	BrainEAC

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112118600-112130400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:112125400-112130400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:112125400-112132200	Weak transcription	Placenta	Placenta
4	chr3:112126200-112134000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:112126200-112134400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:112126200-112135200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:112126400-112134200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:112126600-112135200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:112126600-112135400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:112126800-112131600	Weak transcription	Primary B cells from cord blood	blood
11	chr3:112126800-112135200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:112126800-112136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:112127000-112131600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:112127400-112130400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:112128000-112129600	Weak transcription	Aorta	Aorta
16	chr3:112128200-112129200	Enhancers	Duodenum Mucosa	Duodenum
17	chr3:112128200-112132200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:112128600-112129200	Enhancers	Fetal Intestine Small	intestine
19	chr3:112128800-112130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:112128800-112132600	Weak transcription	Fetal Intestine Large	intestine
21	chr3:112129000-112129600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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