Variant report

Variant	rs13087274
Chromosome Location	chr3:110468958-110468959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11708284	1.00[ASN][1000 genomes]
rs11712535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11713871	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715183	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11721105	0.90[EUR][1000 genomes]
rs11721109	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920731	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920740	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923966	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639004	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060004	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061277	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062747	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065410	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067662	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071834	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075730	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077386	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077450	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077986	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082127	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082391	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082702	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085701	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088357	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089778	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092632	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094610	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097489	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098266	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1462296	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462311	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1462315	0.81[EUR][1000 genomes]
rs2054375	0.81[EUR][1000 genomes]
rs2126450	0.80[EUR][1000 genomes]
rs2399357	0.80[EUR][1000 genomes]
rs35947928	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4267670	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510407	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270154	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647421	0.80[EUR][1000 genomes]
rs931019	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9857228	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001810	chr3:110158316-110522247	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110467000-110469400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:110468200-110471000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:110468200-110471200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:110468200-110472800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:110468400-110470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:110468400-110473600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:110468800-110472400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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