Variant report
| Variant | rs13088462 |
|---|---|
| Chromosome Location | chr3:51071713-51071714 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs9827072 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491647 | chr3:50856276-51245158 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Height | 20881960 | GWAS catalog |
mRNA abundance (count:7)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13088462 | IL13 | trans | lymphoblastoid | seeQTL |
| rs13088462 | GRHL3 | trans | lymphoblastoid | seeQTL |
| rs13088462 | SNX11 | trans | lymphoblastoid | seeQTL |
| rs13088462 | FAM75D1 | trans | lymphoblastoid | seeQTL |
| rs13088462 | ADAMDEC1 | trans | lymphoblastoid | seeQTL |
| rs13088462 | MAL | trans | lymphoblastoid | seeQTL |
| rs13088462 | IL1R2 | trans | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
