Variant report
| Variant | rs13088843 |
|---|---|
| Chromosome Location | chr3:70522420-70522421 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10510999 | 0.90[ASN][1000 genomes] |
| rs11705704 | 0.90[ASN][1000 genomes] |
| rs11714189 | 0.81[ASN][1000 genomes] |
| rs11719839 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11721315 | 0.90[ASN][1000 genomes] |
| rs12486347 | 0.90[ASN][1000 genomes] |
| rs12491347 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12492260 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12495414 | 0.85[ASN][1000 genomes] |
| rs12496319 | 0.90[ASN][1000 genomes] |
| rs17790917 | 0.85[ASN][1000 genomes] |
| rs34415025 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4353776 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4473522 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4974294 | 0.90[ASN][1000 genomes] |
| rs4974296 | 0.85[ASN][1000 genomes] |
| rs55985770 | 0.90[ASN][1000 genomes] |
| rs59478663 | 0.90[ASN][1000 genomes] |
| rs61604727 | 0.90[ASN][1000 genomes] |
| rs902700 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533396 | chr3:69964029-70538306 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv3867 | chr3:70480358-70525397 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv2762336 | chr3:70516421-70527712 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:70521200-70524600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
