Variant report

Variant	rs13089613
Chromosome Location	chr3:49074502-49074503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49065984..49067959-chr3:49073975..49075806,2	MCF-7	breast:
2	chr3:49073963..49076369-chr3:49168247..49170287,2	K562	blood:

Variant related genes	Relation type
ENSG00000272434	Chromatin interaction
ENSG00000178035	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11540500	1.00[MEX][hapmap]
rs11713750	1.00[MEX][hapmap]
rs12637996	1.00[CEU][hapmap]
rs7651612	0.93[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49066800-49130000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49066800-49130200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:49067200-49074800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:49067200-49078600	Weak transcription	Psoas Muscle	Psoas
5	chr3:49067200-49085600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:49067200-49116600	Weak transcription	Right Atrium	heart
7	chr3:49067200-49117200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:49067400-49074800	Strong transcription	Hela-S3	cervix
9	chr3:49067400-49075000	Strong transcription	HepG2	liver
10	chr3:49067400-49075400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:49067400-49075400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:49067400-49075600	Strong transcription	NHEK	skin
13	chr3:49067400-49076400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:49067400-49077200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr3:49067400-49079800	Strong transcription	Placenta	Placenta
16	chr3:49067400-49085000	Strong transcription	Brain Germinal Matrix	brain
17	chr3:49067400-49085600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr3:49067400-49085600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:49067400-49085600	Strong transcription	Fetal Intestine Large	intestine
20	chr3:49067400-49086000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:49067400-49086600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:49067400-49090000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:49067400-49096000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:49067400-49117200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:49067400-49117200	Strong transcription	Fetal Thymus	thymus
26	chr3:49067400-49117400	Strong transcription	Fetal Intestine Small	intestine
27	chr3:49067400-49117400	Strong transcription	Fetal Stomach	stomach
28	chr3:49067400-49117800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:49067400-49118400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:49067600-49074600	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:49067600-49075400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:49067600-49080200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:49067600-49085600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:49067600-49085600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:49067600-49085600	Strong transcription	Liver	Liver
36	chr3:49067600-49086600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:49067600-49086800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:49067600-49095800	Strong transcription	Dnd41	blood
39	chr3:49067600-49097000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr3:49067600-49117200	Strong transcription	Thymus	Thymus
41	chr3:49067600-49117600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:49067800-49075000	Strong transcription	Primary B cells from cord blood	blood
43	chr3:49067800-49075400	Strong transcription	Primary T cells from cord blood	blood
44	chr3:49067800-49075400	Strong transcription	Brain Anterior Caudate	brain
45	chr3:49067800-49076000	Strong transcription	Brain Hippocampus Middle	brain
46	chr3:49067800-49076400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr3:49067800-49086800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr3:49067800-49086800	Strong transcription	Fetal Muscle Leg	muscle
49	chr3:49067800-49117400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:49068000-49075400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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