Variant report

Variant	rs13090060
Chromosome Location	chr3:112076873-112076874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2399422	1.00[JPT][hapmap]
rs7637088	1.00[JPT][hapmap]
rs9843666	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112054800-112083000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:112055600-112080200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:112061200-112083000	Weak transcription	Colonic Mucosa	Colon
4	chr3:112062400-112083000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:112064800-112077200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:112065600-112079600	Weak transcription	Fetal Intestine Large	intestine
7	chr3:112066000-112089800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:112066800-112077000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:112067000-112079400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:112067200-112079800	Weak transcription	Fetal Stomach	stomach
11	chr3:112067200-112080400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:112069200-112084000	Weak transcription	Fetal Kidney	kidney
13	chr3:112069200-112095400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:112070200-112086200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:112070600-112080400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:112070600-112080400	Weak transcription	Brain Anterior Caudate	brain
17	chr3:112070600-112086200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:112070600-112088800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:112070800-112079600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:112070800-112084600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:112070800-112090600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:112071000-112077600	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:112071000-112083000	Weak transcription	Brain Substantia Nigra	brain
24	chr3:112071200-112083800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:112071800-112079400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:112072000-112080600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:112072400-112080400	Weak transcription	Fetal Brain Male	brain
28	chr3:112073000-112080400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:112073200-112077000	Weak transcription	Small Intestine	intestine
30	chr3:112073400-112079600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:112074200-112077000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:112074200-112079600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:112074600-112078000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:112075000-112077400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:112075200-112078200	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr3:112075600-112077200	Strong transcription	Brain Germinal Matrix	brain
37	chr3:112076000-112077400	Genic enhancers	Primary hematopoietic stem cells	blood
38	chr3:112076200-112077200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr3:112076200-112077200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:112076200-112077800	Active TSS	Right Ventricle	heart
41	chr3:112076200-112078200	Enhancers	Primary B cells from peripheral blood	blood
42	chr3:112076400-112077000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:112076400-112077000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr3:112076400-112077000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr3:112076400-112077000	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr3:112076400-112077000	Active TSS	Adipose Nuclei	Adipose
47	chr3:112076400-112077200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr3:112076400-112077200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:112076400-112077200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
50	chr3:112076400-112077600	Enhancers	H1 Cell Line	embryonic stem cell

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