Variant report

Variant	rs13090881
Chromosome Location	chr3:159550129-159550130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10513546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169305	0.84[CEU][hapmap]
rs57440770	0.80[AFR][1000 genomes]
rs7648959	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159543800-159555200	Weak transcription	Lung	lung
4	chr3:159546200-159552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:159546400-159551800	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:159546400-159551800	Enhancers	Brain Hippocampus Middle	brain
7	chr3:159546400-159552000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:159546400-159552000	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:159546400-159552000	Enhancers	Brain Substantia Nigra	brain
10	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
11	chr3:159547600-159550400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:159547600-159551000	Weak transcription	Aorta	Aorta
13	chr3:159547600-159552800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
15	chr3:159548200-159550600	Enhancers	Brain Angular Gyrus	brain
16	chr3:159548600-159551000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:159548600-159554000	Weak transcription	Fetal Stomach	stomach
18	chr3:159548600-159554200	Weak transcription	Hela-S3	cervix
19	chr3:159548600-159555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
21	chr3:159548800-159551200	Enhancers	Thymus	Thymus
22	chr3:159548800-159552800	Weak transcription	HUVEC	blood vessel
23	chr3:159548800-159554000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:159548800-159554200	Weak transcription	Adipose Nuclei	Adipose
25	chr3:159548800-159554200	Weak transcription	NH-A	brain
26	chr3:159548800-159554400	Weak transcription	NHEK	skin
27	chr3:159549000-159550800	Enhancers	Brain Anterior Caudate	brain
28	chr3:159549000-159552600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:159549000-159553200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:159549000-159553800	Weak transcription	Fetal Heart	heart
33	chr3:159549000-159554000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:159549000-159554000	Weak transcription	Psoas Muscle	Psoas
35	chr3:159549000-159554000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:159549000-159554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:159549000-159554200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:159549000-159554200	Weak transcription	Osteobl	bone
39	chr3:159549000-159555000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:159549000-159555200	Weak transcription	Right Atrium	heart
41	chr3:159549000-159555200	Weak transcription	Right Ventricle	heart
42	chr3:159549000-159555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:159549200-159554000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:159549200-159554000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:159549200-159554000	Weak transcription	HSMM	muscle
46	chr3:159549200-159554200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:159549400-159550400	Enhancers	Fetal Thymus	thymus
48	chr3:159549400-159551000	Enhancers	GM12878-XiMat	blood
49	chr3:159549400-159554200	Weak transcription	HMEC	breast
50	chr3:159549600-159550200	Enhancers	Primary B cells from cord blood	blood

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