Variant report

Variant	rs13091209
Chromosome Location	chr3:24958459-24958460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13063815	0.83[AMR][1000 genomes]
rs13079819	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17015451	0.81[EUR][1000 genomes]
rs17195094	0.83[AMR][1000 genomes]
rs17787464	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2363527	0.88[EUR][1000 genomes]
rs33999057	0.80[AMR][1000 genomes]
rs34101887	0.80[EUR][1000 genomes]
rs35145790	0.82[AMR][1000 genomes]
rs35867841	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35999749	0.92[EUR][1000 genomes]
rs71311516	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71311517	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24957400-24964200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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