Variant report

Variant	rs13092831
Chromosome Location	chr3:19505543-19505544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13061887	0.81[MEX][hapmap];0.82[TSI][hapmap]
rs1348229	0.83[GIH][hapmap];0.92[TSI][hapmap]
rs1348230	0.83[CEU][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs1470213	0.96[CEU][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs1550560	0.83[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs1867001	0.83[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap]
rs2165625	0.81[MEX][hapmap]
rs4858318	0.82[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs6549913	0.89[EUR][1000 genomes]
rs6549944	0.80[TSI][hapmap]
rs6549948	0.87[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs6779105	0.86[TSI][hapmap]
rs6799035	0.81[MEX][hapmap];0.82[TSI][hapmap]
rs6809806	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7611730	0.82[MEX][hapmap]
rs7630677	0.86[TSI][hapmap]
rs9310596	0.82[GIH][hapmap];0.83[TSI][hapmap]
rs9809140	0.83[CEU][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs9844177	0.88[EUR][1000 genomes]
rs9871028	0.91[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs9882467	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv948636	chr3:19335802-19856585	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv589855	chr3:19409153-19512074	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3386719	chr3:19454588-19895807	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19474400-19513200	Weak transcription	Brain Germinal Matrix	brain
2	chr3:19480400-19514400	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:19498600-19512600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:19499400-19511000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:19502200-19512800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:19503200-19509400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:19504600-19508200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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