Variant report

Variant	rs13096326
Chromosome Location	chr3:53973805-53973806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13071560	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13073855	0.82[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13088816	0.87[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2232338	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2232341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34310576	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34431816	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34443284	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34549821	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34938855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35222185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36102758	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62619200	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66535155	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66583280	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66720724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66818866	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67340660	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71617207	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014752	chr3:53912429-54123246	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1005411	chr3:53927782-54158638	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53972200-53974800	Enhancers	Hela-S3	cervix
2	chr3:53973800-53974000	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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