Variant report

Variant	rs13097501
Chromosome Location	chr3:156237978-156237979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11926999	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13092847	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3773717	1.00[CEU][hapmap]
rs4254604	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4254605	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4257505	1.00[CEU][hapmap]
rs4574240	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13097501	SSR3	cis	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156227600-156246000	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:156230200-156251000	Weak transcription	Left Ventricle	heart
3	chr3:156231600-156240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:156232200-156249200	Weak transcription	Gastric	stomach
5	chr3:156233400-156246600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:156234200-156240800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:156234400-156244400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:156234400-156248600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:156234400-156251200	Weak transcription	Ovary	ovary
10	chr3:156234600-156241600	Weak transcription	Aorta	Aorta
11	chr3:156235200-156241400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:156235200-156243800	Weak transcription	Adipose Nuclei	Adipose
13	chr3:156235400-156240000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:156235600-156241600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:156236000-156240200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:156236000-156250200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:156236200-156247600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:156236800-156242000	Weak transcription	Fetal Heart	heart
19	chr3:156236800-156251000	Weak transcription	Pancreas	Pancrea
20	chr3:156236800-156251200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:156237200-156243800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:156237200-156250600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:156237600-156238400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:156237600-156241800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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