Variant report

Variant	rs13098842
Chromosome Location	chr3:46631058-46631059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11718490	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11718494	0.89[ASN][1000 genomes]
rs12637699	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3806701	0.85[EUR][1000 genomes]
rs3806702	0.85[EUR][1000 genomes]
rs4682823	0.91[EUR][1000 genomes]
rs6442006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6442008	0.91[EUR][1000 genomes]
rs6769392	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs13098842	TDGF1	cis	lung	GTEx
rs13098842	TDGF1	cis	Muscle Skeletal	GTEx
rs13098842	TDGF1	cis	Esophagus Muscularis	GTEx
rs13098842	TDGF1	cis	Heart Left Ventricle	GTEx
rs13098842	TDGF1	cis	Adipose Subcutaneous	GTEx
rs13098842	TDGF1	cis	Nerve Tibial	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46627200-46634600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:46627200-46637000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
4	chr3:46630600-46631600	Enhancers	Dnd41	blood
5	chr3:46631000-46631200	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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