Variant report
| Variant | rs13100357 |
|---|---|
| Chromosome Location | chr3:60929650-60929651 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:60924570..60926089-chr3:60929535..60931529,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11915345 | 1.00[CEU][hapmap] |
| rs11926400 | 1.00[CHB][hapmap] |
| rs1447918 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1562519 | 1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17064185 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1868220 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2121845 | 1.00[CHB][hapmap];0.85[YRI][hapmap] |
| rs62251574 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6793737 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7619721 | 1.00[CHB][hapmap] |
| rs9311788 | 1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9827976 | 0.87[YRI][hapmap] |
| rs9854653 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534038 | chr3:60781917-60993082 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2757872 | chr3:60781943-61019003 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2759152 | chr3:60781943-61220809 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
