Variant report

Variant	rs13100791
Chromosome Location	chr3:49641049-49641050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13061156	0.87[AMR][1000 genomes]
rs13071087	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3206653	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs35620248	0.87[AMR][1000 genomes]
rs36116071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71324984	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71324987	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49637800-49653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:49638000-49644600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:49638000-49647200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:49639200-49643800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:49639400-49641200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:49639600-49641200	Enhancers	HMEC	breast
7	chr3:49639600-49641200	Enhancers	NHEK	skin
8	chr3:49639600-49641400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:49639600-49641600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:49639800-49644000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:49639800-49644000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:49639800-49644600	Weak transcription	NHDF-Ad	bronchial
13	chr3:49640000-49641200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:49640200-49641200	Enhancers	Primary T cells from cord blood	blood
15	chr3:49640200-49641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr3:49640200-49641200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:49640200-49641200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:49640200-49641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:49640200-49641400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr3:49640200-49641400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:49640200-49641400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:49640200-49641400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr3:49640200-49641800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr3:49640200-49642000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr3:49640400-49641200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:49640400-49646800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:49640600-49644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:49640600-49644200	Weak transcription	Hela-S3	cervix
29	chr3:49640600-49644800	Weak transcription	Brain Angular Gyrus	brain
30	chr3:49640600-49647000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:49640800-49646800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:49641000-49643800	Weak transcription	Spleen	Spleen
33	chr3:49641000-49644000	Weak transcription	Pancreas	Pancrea
34	chr3:49641000-49644600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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