Variant report

Variant	rs13101076
Chromosome Location	chr3:105560751-105560752
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105552906..105555738-chr3:105560216..105562214,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13076107	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv508234	chr3:105549864-105565806	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
2	chr3:105532200-105563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:105533800-105570000	Weak transcription	Dnd41	blood
4	chr3:105534200-105566200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:105540800-105569600	Weak transcription	Fetal Thymus	thymus
6	chr3:105542600-105566000	Weak transcription	Fetal Stomach	stomach
7	chr3:105543400-105560800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:105543400-105581200	Weak transcription	Gastric	stomach
9	chr3:105543800-105571000	Weak transcription	Lung	lung
10	chr3:105544200-105584600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:105546600-105586200	Weak transcription	Esophagus	oesophagus
12	chr3:105546800-105560800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:105548400-105561200	Weak transcription	K562	blood
14	chr3:105548400-105561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:105549000-105560800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:105549000-105571800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:105549200-105564400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:105550000-105562600	Weak transcription	HUVEC	blood vessel
19	chr3:105550000-105569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:105551800-105560800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:105553400-105564000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:105554000-105566400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:105555000-105561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:105555000-105562800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:105555000-105562800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:105555200-105561200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:105555200-105566400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:105555800-105564400	Weak transcription	HMEC	breast
29	chr3:105555800-105565800	Weak transcription	Right Atrium	heart
30	chr3:105555800-105576600	Weak transcription	Psoas Muscle	Psoas
31	chr3:105556200-105560800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:105556200-105561200	Weak transcription	Fetal Brain Male	brain
33	chr3:105556200-105561600	Weak transcription	Brain Substantia Nigra	brain
34	chr3:105556200-105562800	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:105556200-105566600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr3:105556200-105570200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:105556200-105571600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:105556200-105579000	Weak transcription	Stomach Mucosa	stomach
39	chr3:105556400-105560800	Weak transcription	HSMMtube	muscle
40	chr3:105556400-105561000	Weak transcription	Fetal Brain Female	brain
41	chr3:105556400-105562800	Weak transcription	Brain Anterior Caudate	brain
42	chr3:105556400-105562800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr3:105556400-105562800	Weak transcription	Colon Smooth Muscle	Colon
44	chr3:105556400-105562800	Weak transcription	Fetal Kidney	kidney
45	chr3:105556400-105565400	Weak transcription	NHLF	lung
46	chr3:105556400-105565600	Weak transcription	Adipose Nuclei	Adipose
47	chr3:105556400-105566200	Weak transcription	Fetal Heart	heart
48	chr3:105556400-105568000	Weak transcription	HSMM	muscle
49	chr3:105556600-105561800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:105556600-105569600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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