Variant report

Variant	rs13101737
Chromosome Location	chr4:106982793-106982794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13138818	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34271829	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4698956	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66500360	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs66911869	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106959600-106983400	Weak transcription	HepG2	liver
2	chr4:106967600-106983600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:106967600-106983800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:106967800-106984200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:106967800-106994600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:106968000-106984600	Weak transcription	Primary B cells from cord blood	blood
7	chr4:106972400-106997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:106973000-106982800	Weak transcription	Fetal Lung	lung
9	chr4:106979400-106982800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:106979400-106983800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:106980400-106986600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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